Maria Figures Final

Results from Marine Heatwave Simulations 2023

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This markdown contains the code to execute and save figures for Grigoratou et al. 2023

Loading the Data

Data has been freshly updated in August 2023 to be consistent with an error/bug found in the SST data.

Locations to Files: Here is the link to the resources used to create these figures:

Species Data Key

Dominant Species - Data Wrangle:

Couple data wrangling steps here: - make row and column identifiers for what the season was, and what the year was that matches the heatwave trial - add one year of control as a lead-in for plots - join the control biomass as a column so we can calculate difference and percent difference from what it would be without a heatwave disturbance - do some benchmarking against the taxa specific intra-annual fluctuation in biomass

Prepare the absolute biomass data for the dominant species:

Dominant Species - Seasonal Cycle Control

NOTES: Do a similar cleanup to the heatwave results, with some minor tweaks want all the columns to match so they can append. year = 0, hw_season is either none, or we can repeat it 4 times to filter with the data or we can just plop it on top whenever we want it later.

Dominant Species Data Wrangling:

1. Isolate the HW Season Responses:

2. Lead with 1-Year of Control:

3. Calculate Difference from Control:

Fig. 1: Abiotic Conditions

The following figures show the annual cycles of abiotoc conditions as their own plots. This is the context for how each seasonal cycle progresses within the year, and what the plankton community are responding to.

SST

MLD

Nitrogen

Fig. 2 Control Conditions

This is a 3 column figure. The left column shows the daily biomass fluctuation cycle. The ccenter column shows the seasonal averages, and the third column displays the biomass for the dominant species.

Daily Biomass

Seasonal Biomass

Dominant Species Biomass

Fig. 2 Complete

Figure 1: ?(caption)

Fig 3. Size Bin Response

Absolute Biomass concentration anomalies (HW/afterHW – preHW) for the biomass size bins of (a) protists, (b) passive and (c) active copepod feeders for the winter, autumn, spring and summer HW scenarios.

Fig 3 Seasonal Heatwaves

These focus in on one specific seasonal heatwave. This makes it easier to see progression within one specific season at the expense of being able to see the annual cycles

Autumn Heatwave

Winter Heatwave

Spring Heatwave

Summer Heatwave

Fig 4 Heatmaps: Dominant Species Seasonal Heatwave Response

Autumn Heatwave

Winter Heatwave

Spring Heatwave

Summer Heatwave

Fig 4. Dominant Species Biomass

Absolute seasonal biomass concentration anomalies of the dominant groups of (a) protists, (b) passive and (a) active copepod feeders for the autumn HW scenario during the heatwave and 2 years after the heatwave.

Fig 5. Shannon Diversity

Annual Shannon Diversity Index for (a) protists, (b) passive and (c) active copepod feeders for the winter, spring, autumn and winter HW scenarios. y axis: years. Year 0: pre-heatwave, Year 1: heatwave (in red) Years 2-9: after-heatwave.

Fig 6. Biomass Anomalies for Differential Exposure

Biomass anomalies (HW protists or copepods only - HW on both protists and copepods) for all seasons for the seasonal HWs and the 7 seasons afterwards. X axis: size bins, y axis: absolute biomass anomalies. The median value and the Standard deviation with a boxplot.

High-Res Exports

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